STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
STM1016Gifsy-2 prophage protein; Hypothetical protein (gi|7467246). (115 aa)    
Predicted Functional Partners:
STM1015
Gifsy-2 prophage ATPase involved in DNA replication initiation; dnaC protein homolog (gi|7443681).
  
    0.797
STM1017
Gifsy-2 prophage protein; Hypothetical protein 11 (gi|7467260).
  
    0.788
STM1014
Gifsy-2 prophage putative regulatory protein; Probable replication protein (gi|7467283).
       0.783
STM1013
Gifsy-2 prophage putative regulatory protein; Probable regulatory protein (gi|7467282).
  
    0.586
STM1018
Gifsy-2 prophage protein; Hypothetical protein 11 (gi|7467261).
  
    0.558
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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