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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
STM1026Gifsy-2 prophage protein. (170 aa)    
Predicted Functional Partners:
STM2139
Putative inner membrane protein.
      
 0.938
STM2614
Gifsy-1 prophage protein.
   
 
 
0.938
STM1055
Gifsy-2 prophage protein; Hypothetical protein (gi|5410522).
   
  
 0.912
pipA
Pathogenicity island encoded protein: SPI5.
     
 
0.900
STM0278
Putative periplasmic protein.
      
 0.893
STM0291
Putative RHS-family protein; Similar to E. coli rhsD protein in rhs element (AAC73599.1); Blastp hit to AAC73599.1 (1426 aa), 27% identity in aa 315 - 985, 46% identity in aa 1151 - 1261, 25% identity in aa 297 - 788, 24% identity in aa 346 - 870, 22-1073758628dentity in aa 465 - 904, 26% identity in aa 317 - 724, 32-1073758654dentity in aa 4 - 143, 24% identity in aa 232 - 605, 21% identity in aa 562 - 970, 23% identity in aa 318 - 755, 32% identity in aa 974 - 1076, 26% identity in aa 935 - 1051, 22% identity in aa 358 - 540, 37% identity in aa 1 - 32, 31-1073758588dentity in aa 1041 [...]
      
 0.868
STM0292
Putative RHS-family protein; Similar to E. coli rhsE protein in rhs element (AAC74538.1); Blastp hit to AAC74538.1 (682 aa), 44% identity in aa 426 - 541, 28% identity in aa 273 - 300.
   
  
 0.857
STM2585
Gifsy-1 prophage protein; Similar to transposase.
   
  
 0.766
STM0289
Putative cytoplasmic protein.
      
 0.765
rfbX
Putative O-antigen transferase; May be involved in the translocation process of the nascent O-polysaccharide molecules and/or its ligation to lipid A core units.
      
 0.750
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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