Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
STM1047Gifsy-2 prophage probable tail assembly protein. (234 aa)    
Predicted Functional Partners:
STM1046
Gifsy-2 prophage probable tail assembly protein.
 
    0.932
STM1045
Gifsy-2 prophage probable minor tail protein; Lambda phage L tail component homolog (gi|2232360).
 
   0.894
STM1048
Gifsy-2 prophage host specificity protein J, phage lambda.
 
   0.821
sodC
Gifsy-2 prophage superoxide dismutase precursor (Cu-Zn); Destroys radicals which are normally produced within the cells and which are toxic to biological systems; Belongs to the Cu-Zn superoxide dismutase family.
  
    0.557
STM1869A
Hypothetical protein.
  
    0.538
STM0922
Putative Fels-1 prophage tail assembly protein.
  
    0.490
STM2589
Gifsy-1 prophage protein; Similar to host specificity protein-J in phage lambda.
  
   0.437
STM0907
Putative Fels-1 prophage chitinase.
  
    0.430
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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