STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
STM1056Gifsy-2 prophage protein; Similar to msgA; hypothetical protein (gi|5410521). (63 aa)    
Predicted Functional Partners:
STM2636
Gifsy-1 prophage protein; Similar to integrase in phage; probable integrase (gi|7467280); Belongs to the 'phage' integrase family.
   
  
 0.949
STM1010
Gifsy-2 prophage protein; Hypothetical protein 4 (gi|7467264).
   
  
 0.803
STM2631
Gifsy-1 prophage protein; Hypothetical protein 4 (gi|7467264).
   
  
 0.801
res
DNA restriction (DNA helicase); Cleaves DNA some 25 base-pairs downstream from the recognition site. May also act as a helicase involved in unwinding DNA at the cleavage site. Protein only required for restriction but needs the presence of the modification enzyme; Belongs to the type III restriction-modification system res protein family.
      
 0.712
tnpA_3
Transposase for insertion sequence element is200 (SW:T200_SALTY).
      
 0.674
STM4495
Putative type II restriction enzyme, methylase subunit.
      
 0.650
STM2740
Fels-2 prophage protein; Similar to int protein in phage CP4-57; similar to E. coli prophage CP4-57 integrase (AAC75670.1); Blastp hit to AAC75670.1 (413 aa), 47% identity in aa 1 - 341; Belongs to the 'phage' integrase family.
   
  
 0.551
gogB
Gifsy-1 prophage leucine-rich repeat protein.
      
 0.514
STM2769
Similar to E. coli IS3 putative transposase (AAC75150.1); Blastp hit to AAC75150.1 (288 aa), 84% identity in aa 1 - 288.
      
 0.512
metA
Homoserine transsuccinylase; Transfers a succinyl group from succinyl-CoA to L-homoserine, forming succinyl-L-homoserine.
      
 0.474
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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