STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uupContains duplicated ATPase domain; similar to E. coli putative ATP-binding component of a transport system (AAC74035.1); Blastp hit to AAC74035.1 (635 aa), 94% identity in aa 1 - 634. (635 aa)    
Predicted Functional Partners:
ycbY
Putative N6-adenine-specific DNA methylase; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family.
 
  
 0.972
pqiA
Similar to E. coli paraquat-inducible protein A (AAC74036.1); Blastp hit to AAC74036.1 (417 aa), 89% identity in aa 1 - 417.
  
    0.779
ymbA
Putative outer membrane protein; Similar to E. coli orf, hypothetical protein (AAC74038.1); Blastp hit to AAC74038.1 (182 aa), 83% identity in aa 1 - 182.
  
    0.776
pqiB
Similar to E. coli paraquat-inducible protein B (AAC74037.1); Blastp hit to AAC74037.1 (546 aa), 89% identity in aa 1 - 546.
       0.773
potI
Putrescine transporter; ABC superfamily (membrane); similar to E. coli putrescine transport protein; permease (AAC73944.1); Blastp hit to AAC73944.1 (281 aa), 94% identity in aa 1 - 281.
   
  
 0.704
ygiR
Putative Fe-S oxidoreductase family 2; Similar to E. coli orf, hypothetical protein (AAC76051.1); Blastp hit to AAC76051.1 (413 aa), 46% identity in aa 1 - 26.
   
  
 0.679
ygdD
Putative small membrane protein; Similar to E. coli orf, hypothetical protein (AAC75849.1); Blastp hit to AAC75849.1 (131 aa), 90% identity in aa 1 - 131.
      
 0.658
typA
GTP-binding elongation factor family protein; A 50S ribosomal subunit assembly protein with GTPase activity, required for 50S subunit assembly at low temperatures, may also play a role in translation. Binds GTP and analogs. Binds the 70S ribosome between the 30S and 50S subunits, in a similar position as ribosome-bound EF-G; it contacts a number of ribosomal proteins, both rRNAs and the A-site tRNA (By similarity). A ribosome-stimulated GTPase, GTPase activity increases 4 fold in the presence of 70S ribosomes. Bind to 70S ribosomes in the presence of GTP or its non- hydrolyzable analog [...]
 
  
 0.654
rplX
50S ribosomal subunit protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.
   
 
 0.649
rpmC
Similar to E. coli 50S ribosomal subunit protein L29 (AAC76337.1); Blastp hit to AAC76337.1 (63 aa), 98% identity in aa 1 - 63; Belongs to the universal ribosomal protein uL29 family.
   
 
 0.645
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.