STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yccTPutative periplasmic protein; Similar to E. coli orf, hypothetical protein (AAC74050.1); Blastp hit to AAC74050.1 (220 aa), 84% identity in aa 1 - 220; Belongs to the UPF0319 family. (220 aa)    
Predicted Functional Partners:
yccS
Putative efflux (PET) family transporter; Similar to E. coli orf, hypothetical protein (AAC74046.1); Blastp hit to AAC74046.1 (720 aa), 88% identity in aa 4 - 710.
     
 0.736
yccF
Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC74047.1); Blastp hit to AAC74047.1 (148 aa), 92% identity in aa 1 - 148.
     
 0.728
yhbT
Putative lipid carrier protein; Similar to E. coli orf, hypothetical protein (AAC76191.1); Blastp hit to AAC76191.1 (174 aa), 90% identity in aa 1 - 174.
      
 0.719
yhbU
Similar to E. coli putative collagenase (AAC76192.1); Blastp hit to AAC76192.1 (331 aa), 96% identity in aa 1 - 331.
      
 0.615
mgsA
Methylglyoxal synthase; Catalyzes the formation of methylglyoxal from dihydroxyacetone phosphate.
     
 0.596
yeiA
Putative dihydropyrimidine dehydrogenase; Involved in pyrimidine base degradation. Catalyzes physiologically the reduction of uracil to 5,6-dihydrouracil (DHU) by using NADH as a specific cosubstrate. It also catalyzes the reverse reaction and the reduction of thymine to 5,6-dihydrothymine (DHT) (By similarity).
      
 0.549
STM1078
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC74051.1); Blastp hit to AAC74051.1 (164 aa), 91% identity in aa 27 - 164.
  
  
 0.537
gutM
Putative glucitol (srl) operon regulatory protein; Similar to E. coli glucitol operon activator (AAC75748.1); Blastp hit to AAC75748.1 (119 aa), 83% identity in aa 1 - 119.
      
 0.438
kdgT
2-keto-3-deoxygluconate permease; The 2-keto-3-deoxygluconate permease transports the degraded pectin products into the bacterial cell, where they serve as carbon and energy sources. This is a hydrogen coupled transport system (By similarity); Belongs to the KdgT transporter family.
      
 0.425
napD
Periplasmic nitrate reductase; Chaperone for NapA, the catalytic subunit of the periplasmic nitrate reductase. It binds directly and specifically to the twin- arginine signal peptide of NapA, preventing premature interaction with the Tat translocase and premature export.
      
 0.403
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.