STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
STM1089Pathogenicity island encoded protein: SPI5. (106 aa)    
Predicted Functional Partners:
STM1093
Pathogenicity island encoded protein: SPI5.
   
  
 0.904
orfX
Pathogenicity island encoded protein: SPI5.
   
  
 0.892
STM2908
Putative cytoplasmic protein.
      
 0.831
pipC
Pathogenicity island encoded protein: SPI5; Molecular chaperone required for SopB/SigD stabilization and secretion; Belongs to the IpgE/SigE chaperone family.
   
  
 0.791
STM2903
Putative cytoplasmic protein.
      
 0.766
STM2901
Putative cytoplasmic protein.
      
 0.700
pphB
Serine/threonine specific protein phosphatase 2; Can hydrolyze phosphorylated Ser-, Thr- or Tyr-substrates in vitro. The natural substrate is unknown.
      
 0.699
pipB
Pathogenicity island encoded protein: SPI5; Effector proteins function to alter host cell physiology and promote bacterial survival in host tissues. Does not appear to be required for the formation or the maintenance of either Salmonella- containing vacuole (SCV) or the Salmonella-induced filaments (Sifs). Not required for intracellular replication in phagocytic cells.
  
  
 0.656
ssaS
Secretion system apparatus; Part of a type III secretion system; Belongs to the FliQ/MopD/SpaQ family.
   
  
 0.572
rhuM
Putative cytoplasmic protein; Pathogenicity island encoded protein: SPI3; RhuM (gi|4324608).
      
 0.455
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.