Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yccJPutative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC74088.1); Blastp hit to AAC74088.1 (75 aa), 92% identity in aa 1 - 75. (75 aa)    
Predicted Functional Partners:
wraB
Similar to E. coli trp repressor binding protein; affects association of trp repressor and operator (AAC74089.1); Blastp hit to AAC74089.1 (198 aa), 94% identity in aa 1 - 198.
 
  
 0.997
ymdF
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC74341.1); Blastp hit to AAC74341.1 (78 aa), 87% identity in aa 20 - 73.
  
    0.934
yaeP
Putative cytoplasmic protein; Belongs to the UPF0253 family.
   
  
 0.897
elaB
Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC75326.1); Blastp hit to AAC75326.1 (101 aa), 89% identity in aa 1 - 101.
   
    0.864
ydiZ
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC74794.1); Blastp hit to AAC74794.1 (96 aa), 69% identity in aa 1 - 94.
   
  
 0.833
yahO
Putative periplasmic protein; Similar to E. coli orf, hypothetical protein (AAC73432.1); Blastp hit to AAC73432.1 (91 aa), 72% identity in aa 1 - 91.
   
  
 0.821
ybaY
Similar to E. coli glycoprotein/polysaccharide metabolism (AAC73556.1); Blastp hit to AAC73556.1 (190 aa), 88% identity in aa 1 - 190.
   
  
 0.810
yqjE
Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC76134.1); Blastp hit to AAC76134.1 (134 aa), 89% identity in aa 1 - 130.
   
  
 0.800
yqjD
Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC76133.1); Blastp hit to AAC76133.1 (101 aa), 90% identity in aa 1 - 101.
   
    0.760
yhhA
Putative outer membrane protein; Similar to E. coli orf, hypothetical protein (AAC76473.1); Blastp hit to AAC76473.1 (146 aa), 66% identity in aa 1 - 146.
   
  
 0.760
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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