STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ymdAPutative periplasmic protein; Hypothetical protein in csgC-mdoG intergenic region precursor. (SW:YMDA_SALTY); To the N-terminal of the FimA/PapA family of fimbria proteins. (106 aa)    
Predicted Functional Partners:
yciK
Putative oxoacyl-(acyl carrier protein) reductase; Similar to E. coli putative oxidoreductase (AAC74353.1); Blastp hit to AAC74353.1 (252 aa), 88% identity in aa 1 - 252.
      
 0.834
ygdI
Putative lipoprotein; Similar to E. coli orf, hypothetical protein (AAC75851.1); Blastp hit to AAC75851.1 (76 aa), 93% identity in aa 2 - 75.
   
  
 0.770
sohB
Similar to E. coli putative protease (AAC74354.1); Blastp hit to AAC74354.1 (349 aa), 87% identity in aa 1 - 349.
      
 0.674
csgC
Putative curli production protein; Plays a role in the extracellular assembly of CsgA into thin aggregative fimbriae (Tafi) fibers. Assembly may also require CsgE. Tafi are thought to be assembled via an extracellular nucleation- precipitation (ENP) pathway, and possibly also via an intracellular non-CsgC-dependent pathway (By similarity); Belongs to the CsgC/AgfC family.
  
  
 0.615
ymdB
Putative ACR protein; Deacetylates O-acetyl-ADP ribose to yield ADP-ribose and free acetate. Down-regulates ribonuclease 3 (RNase III) activity. Acts by interacting directly with the region of the ribonuclease that is required for dimerization/activation; Belongs to the YmdB family.
     
 0.571
ymdC
Putative phospholipase; Catalyzes the synthesis of cardiolipin (CL) (diphosphatidylglycerol) from phosphatidylglycerol (PG) and phosphatidylethanolamine (PE); Belongs to the phospholipase D family. Cardiolipin synthase subfamily. ClsC sub-subfamily.
  
    0.566
hypD
Putative hydrogenase expression/formation protein; Similar to E. coli pleiotrophic effects on 3 hydrogenase isozymes (AAC75771.1); Blastp hit to AAC75771.1 (373 aa), 94% identity in aa 1 - 372; Belongs to the HypD family.
      
 0.453
ygcF
Putative organic radical activating enzymes; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds.
      
 0.451
STM1934
Putative outer membrane lipoprotein; Similar to E. coli orf, hypothetical protein (AAC74974.1); Blastp hit to AAC74974.1 (107 aa), 61% identity in aa 1 - 104.
   
    0.444
csgA
Curlin major subunit; Curlin is the structural subunit of the curli. Curli are coiled surface structures that assemble preferentially at growth temperatures below 37 degrees Celsius. Curli can bind to fibronectin; Belongs to the CsgA/CsgB family.
  
    0.414
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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