Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
STM1268Putative cytoplasmic protein. (49 aa)    
Predicted Functional Partners:
STM1267
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC74250.1); Blastp hit to AAC74250.1 (88 aa), 41% identity in aa 23 - 88.
     
 0.935
STM0971
Putative cytoplasmic protein.
      
 0.859
STM1575
Putative transcriptional regulator, TetR family.
      
 0.859
yhcO
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC76271.1); Blastp hit to AAC76271.1 (90 aa), 76% identity in aa 1 - 90.
      
 0.859
STM3696
Similar to E. coli L-idonate transcriptional regulator (AAC77221.1); Blastp hit to AAC77221.1 (332 aa), 30% identity in aa 7 - 326.
      
 0.859
STM0266
Putative cytoplasmic protein.
      
 0.858
STM1630
Putative inner membrane protein.
      
 0.854
STM0295
Putative cytoplasmic protein.
      
 0.818
ybiK
Putative asparaginase; Degrades proteins damaged by L-isoaspartyl residue formation (also known as beta-Asp residues). Degrades L-isoaspartyl-containing di- and tripeptides. Acts best on iso-Asp-Leu, followed by iso-Asp-Ala, -His and to a lesser extent iso-Asp-Lys, -Phe and iso-Asp-Leu-Ala. Does not act on internal iso-Asp bonds (Als-iso-Asp-Leu-Ala). Does not act on alpha-Asp bonds. Has poor L-asparaginase activity. Belongs to the Ntn-hydrolase family.
      
 0.755
STM0289
Putative cytoplasmic protein.
      
 0.742
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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