Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
STM1329Putative inner membrane protein. (104 aa)    
Predicted Functional Partners:
STM1330
Putative DNA/RNA non-specific endonuclease.
  
  
 0.924
STM1600
Putative inner membrane protein.
   
  
 0.897
STM1854
Putative inner membrane protein.
   
  
 0.897
STM2585
Gifsy-1 prophage protein; Similar to transposase.
      
 0.860
STM4312
Putative phage protein.
   
  
 0.857
STM3138
Similar to E. coli methyl-accepting chemotaxis protein I, serine sensor receptor (AAC77311.1); Blastp hit to AAC77311.1 (551 aa), 30% identity in aa 319 - 463.
      
 0.836
STM3216
Similar to E. coli methyl-accepting chemotaxis protein I, serine sensor receptor (AAC77311.1); Blastp hit to AAC77311.1 (551 aa), 36% identity in aa 2 - 523.
      
 0.677
STM1328
Putative outer membrane protein.
  
    0.542
STM1331
Putative inner membrane protein.
  
    0.467
hilD
Regulatory helix-turn-helix proteins, araC family; HilD (gi|4455108).
   
  
 0.411
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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