Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ydiLPutative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC74759.1); Blastp hit to AAC74759.1 (127 aa), 59% identity in aa 10 - 127. (119 aa)    
Predicted Functional Partners:
yifL
Putative outer membrane lipoprotein.
      
 0.853
ytfP
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC77179.1); Blastp hit to AAC77179.1 (113 aa), 92% identity in aa 1 - 113.
      
 0.768
stcB
Similar to E. coli putative chaperone (AAC75171.1); Blastp hit to AAC75171.1 (239 aa), 64% identity in aa 16 - 239.
   
  
 0.753
yjeT
Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC77133.1); Blastp hit to AAC77133.1 (65 aa), 89% identity in aa 1 - 65.
      
 0.727
ydiK
Putative permease; Similar to E. coli orf, hypothetical protein (AAC74758.1); Blastp hit to AAC74758.1 (370 aa), 89% identity in aa 1 - 370.
      
 0.726
ytfM
Putative outer membrane protein; Similar to E. coli orf, hypothetical protein (AAC77177.1); Blastp hit to AAC77177.1 (577 aa), 90% identity in aa 3 - 577.
      
 0.726
stcD
Putative outer membrane lipoprotein; Similar to E. coli putative type-1 fimbrial protein (AAC75169.1); Blastp hit to AAC75169.1 (344 aa), 50% identity in aa 3 - 344.
   
  
 0.679
ydiM
Similar to E. coli putative transport system permease protein (AAC74760.1); Blastp hit to AAC74760.1 (404 aa), 79% identity in aa 1 - 395.
  
    0.518
ydiN
Similar to E. coli putative amino acid/amine transport protein (AAC74761.1); Blastp hit to AAC74761.1 (423 aa), 85% identity in aa 3 - 412.
  
    0.492
stcC
Similar to E. coli putative outer membrane protein (AAC75170.1); Blastp hit to AAC75170.1 (826 aa), 74% identity in aa 1 - 826.
   
  
 0.455
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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