Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ssaHSecretion system apparatus; SsaH (gi|3776128). (75 aa)    
Predicted Functional Partners:
ssaG
Secretion system apparatus; SsaH (gi|2460267).
  
  
 0.995
ssaI
Secretion system apparatus; SsaI (gi|3776129).
  
  
 0.990
ssaE
Secretion system effector; Putative secretory apparatus component (gi|3377860).
  
  
 0.963
ssaJ
Secretion system apparatus protein; Component of Salmonella pathogenicity island 2 (SPI-2) type III secretion system, required for secretion of some type III-secreted effectors including the SpvB toxin.
  
  
 0.936
ssaR
Homology with YscR of the secretion system of Yersinia; virulence protein yscr (SW:YSCR_SALTY).
  
  
 0.840
ssaK
Secretion system apparatus protein SSAK. (SW:SSAK_SALTY).
  
  
 0.827
ssaL
Secretion system apparatus protein SSAL. (SW:SSAL_SALTY).
  
  
 0.807
ssaD
Secretion system apparatus protein; SpiB (gi|1498308).
  
  
 0.797
sseE
Secretion system effector; SseE (gi|3377866).
  
  
 0.792
sscB
Secretion system chaparone; SscB (gi|3377867).
  
  
 0.792
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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