STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ssaRHomology with YscR of the secretion system of Yersinia; virulence protein yscr (SW:YSCR_SALTY). (215 aa)    
Predicted Functional Partners:
ssaT
Secretion system apparatus protein; Part of a type III secretion system; Belongs to the FliR/MopE/SpaR family.
 
 
 0.999
ssaS
Secretion system apparatus; Part of a type III secretion system; Belongs to the FliQ/MopD/SpaQ family.
 
 
 0.998
ssaJ
Secretion system apparatus protein; Component of Salmonella pathogenicity island 2 (SPI-2) type III secretion system, required for secretion of some type III-secreted effectors including the SpvB toxin.
 
  
 0.997
ssaU
Secretion system apparatus protein; Part of a type III secretion system; Belongs to the type III secretion exporter family.
 
  
 0.995
invA
Invasion protein; Involved in the invasion of the cells of the intestinal epithelium. Could be involved in the translocation of the InvE protein; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.
 
  
 0.988
ssaV
Secretion system apparatus protein; Component of Salmonella pathogenicity island 2 (SPI-2) type III secretion system, required for secretion of some type III-secreted effectors including the SpvB toxin.
 
  
 0.985
ssaC
Secretion system apparatus protein; SpiA (gi|1498307).
 
  
 0.983
ssaD
Secretion system apparatus protein; SpiB (gi|1498308).
  
  
 0.978
ssaL
Secretion system apparatus protein SSAL. (SW:SSAL_SALTY).
  
  
 0.977
ssaN
Homology with the YscN family of proteins; probable secretion system apparatus ATP synthase SSAN. (SW:SSAN_SALTY); Belongs to the ATPase alpha/beta chains family.
 
  
 0.974
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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