STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydhIPutative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC74715.1); Blastp hit to AAC74715.1 (78 aa), 76% identity in aa 1 - 78. (78 aa)    
Predicted Functional Partners:
ydhJ
Putative multidrug resistance efflux pump; Similar to E. coli putative membrane protein (AAC74716.1); Blastp hit to AAC74716.1 (299 aa), 83% identity in aa 9 - 299; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
 0.995
ydhK
Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC74717.1); Blastp hit to AAC74717.1 (670 aa), 84% identity in aa 1 - 669.
  
  
 0.982
slyA
MarR family transcriptional regulator for hemolysin; Transcription regulator that can specifically activate or repress expression of target genes. Required for virulence and survival in the macrophage environment. Probably activates expression of ispA, xseB genes, and of omp operon.
  
  
 0.881
sgcX
Putative cellulase protein; Similar to E. coli putative lyase/synthase (AAC77261.1); Blastp hit to AAC77261.1 (383 aa), 84% identity in aa 11 - 382.
   
  
 0.860
yecH
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC74976.1); Blastp hit to AAC74976.1 (79 aa), 87% identity in aa 1 - 79.
   
  
 0.652
emrA
Similar to E. coli multidrug resistance secretion protein (AAC75732.1); Blastp hit to AAC75732.1 (390 aa), 89% identity in aa 1 - 390.
   
  
 0.474
pgtP
Transporter protein; The phosphoglycerate transporter protein is a part of the PGT transport system. It is the membrane bound transporter for phosphoglycerate into salmonella.
      
 0.450
marR
Transcriptional repressor of marRAB operon; Repressor of the marRAB operon which is involved in the activation of both antibiotic resistance and oxidative stress genes. Binds to the marO operator/promoter site.
   
  
 0.407
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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