STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydgHPutative periplasmic protein; Similar to E. coli orf, hypothetical protein (AAC74676.1); Blastp hit to AAC74676.1 (314 aa), 90% identity in aa 1 - 314. (314 aa)    
Predicted Functional Partners:
yjfY
Putative outer membrane protein; Similar to E. coli orf, hypothetical protein (AAC77156.1); Blastp hit to AAC77156.1 (91 aa), 71% identity in aa 1 - 91.
      
 0.898
STM0565
Putative periplasmic protein; Similar to E. coli orf, hypothetical protein (AAC73406.1); Blastp hit to AAC73406.1 (83 aa), 53% identity in aa 6 - 83.
      
 0.805
STM3362
Putative periplasmic protein; Similar to E. coli orf, hypothetical protein (AAC76270.1); Blastp hit to AAC76270.1 (104 aa), 53% identity in aa 18 - 104.
      
 0.805
STM0082
Putative secreted protein; Similar to E. coli orf, hypothetical protein (AAC76270.1); Blastp hit to AAC76270.1 (104 aa), 36% identity in aa 18 - 103.
      
 0.765
yjfN
Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC77145.1); Blastp hit to AAC77145.1 (100 aa), 80% identity in aa 7 - 100.
      
 0.764
yjfO
Putative lipoprotein; Similar to E. coli orf, hypothetical protein (AAC77146.1); Blastp hit to AAC77146.1 (142 aa), 78% identity in aa 34 - 142.
      
 0.764
ybiJ
Putative periplasmic protein; Similar to E. coli orf, hypothetical protein (AAC73889.1); Blastp hit to AAC73889.1 (86 aa), 80% identity in aa 1 - 86.
      
 0.761
STM1026
Gifsy-2 prophage protein.
      
 0.700
yhcN
Putative outer membrane protein; Similar to E. coli orf, hypothetical protein (AAC76270.1); Blastp hit to AAC76270.1 (104 aa), 79% identity in aa 18 - 104.
      
 0.700
STM0278
Putative periplasmic protein.
      
 0.699
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.