Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ynfAPutative inner membrane lipoprotein; Similar to E. coli orf, hypothetical protein (AAC74654.1); Blastp hit to AAC74654.1 (108 aa), 88% identity in aa 1 - 108. (108 aa)    
Predicted Functional Partners:
ynfB
Putative periplasmic protein; Similar to E. coli orf, hypothetical protein (AAC74655.1); Blastp hit to AAC74655.1 (113 aa), 81% identity in aa 1 - 113; Belongs to the UPF0482 family.
     
 0.760
rspA
Putative dehydratase; Similar to E. coli starvation sensing protein (AAC74653.1); Blastp hit to AAC74653.1 (404 aa), 94% identity in aa 1 - 404.
 
    0.737
ydbL
Putative periplasmic protein; Similar to E. coli orf, hypothetical protein (AAC74465.1); Blastp hit to AAC74465.1 (110 aa), 70% identity in aa 3 - 109.
   
  
 0.727
ybaM
Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC73568.1); Blastp hit to AAC73568.1 (53 aa), 80% identity in aa 1 - 49.
      
 0.726
yniB
Putative regulator; Similar to E. coli orf, hypothetical protein (AAC74796.1); Blastp hit to AAC74796.1 (178 aa), 83% identity in aa 1 - 178.
      
 0.725
yccX
Putative phosphohydrolase; Similar to E. coli orf, hypothetical protein (AAC74054.1); Blastp hit to AAC74054.1 (92 aa), 78% identity in aa 1 - 92.
   
  
 0.679
yfjD
Similar to E. coli putative transport protein (AAC75662.1); Blastp hit to AAC75662.1 (227 aa), 94% identity in aa 1 - 227.
     
 0.676
ybdJ
Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC73681.1); Blastp hit to AAC73681.1 (82 aa), 85% identity in aa 1 - 82.
      
 0.649
sugE
Putative DMT superfamily transport protein; Guanidinium ion exporter. Couples guanidinium export to the proton motive force, exchanging one guanidinium ion for two protons. Belongs to the drug/metabolite transporter (DMT) superfamily. Small multidrug resistance (SMR) (TC 2.A.7.1) family. Gdx/SugE subfamily.
     
 0.574
hisA
N-(5'-phospho-L-ribosyl-formimino)-5-amino-1- (5'-phosphoribosyl)-4-imidazolecarboxamide isomerase; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotideisomerase. (SW:HIS4_SALTY).
     
 0.533
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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