STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydeESimilar to E. coli putative transport protein (AAC74607.1); Blastp hit to AAC74607.1 (395 aa), 76% identity in aa 1 - 395. (395 aa)    
Predicted Functional Partners:
ydeD
Putative permease, integral membrane protein; May be an export pump for several amino acids and their metabolites, including cysteine; Belongs to the EamA transporter family.
  
  
 0.755
ygbE
Putative inner membrane protein; Similar to E. coli putative cytochrome oxidase subunit (AAC75791.1); Blastp hit to AAC75791.1 (107 aa), 66% identity in aa 1 - 107.
      
 0.680
ybiP
Putative integral membrane protein; Similar to E. coli putative enzyme (AAC73902.1); Blastp hit to AAC73902.1 (527 aa), 84% identity in aa 1 - 526.
  
    0.590
damX
Membrane protein; Non-essential cell division protein.
  
     0.567
yeaK
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC74857.1); Blastp hit to AAC74857.1 (167 aa), 87% identity in aa 1 - 165.
  
     0.483
ydgI
Putative amino acid transporter; Similar to E. coli putative arginine/ornithine antiporter (AAC74677.1); Blastp hit to AAC74677.1 (460 aa), 92% identity in aa 1 - 460.
   
  
 0.450
yhjU
Putative inner membrane protein; Required for cellulose biosynthesis.
      
 0.450
ybhC
Similar to E. coli putative pectinesterase (AAC73859.1); Blastp hit to AAC73859.1 (427 aa), 86% identity in aa 1 - 427.
  
     0.441
yedE
Putative membrane component of transport system; Hypothetical 44.2 Kda protein in amyA-fliE intergenic region. (SW:YEDE_SALTY).
  
     0.426
bax
Gene transcribed divergently from malS; Similar to E. coli putative ATP-binding protein (AAC76594.1); Blastp hit to AAC76594.1 (274 aa), 89% identity in aa 1 - 274.
  
     0.426
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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