STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
STM1546Putative monooxygenase; Similar to E. coli 3-(3-hydroxyphenyl)propionate hydroxylase (AAC73450.1); Blastp hit to AAC73450.1 (554 aa), 29% identity in aa 15 - 353, 35% identity in aa 494 - 521. (502 aa)    
Predicted Functional Partners:
STM1545
Putative multidrug efflux protein; Similar to E. coli putative DEOR-type transcriptional regulator (AAC73932.1); Blastp hit to AAC73932.1 (402 aa), 23% identity in aa 26 - 394.
  
    0.940
STM1547
Putative marR-family transcriptional regulator.
 
  
 0.912
pqaA
PhoPQ-regulated protein.
  
    0.578
STM2175
Putative monooxygenase; Similar to E. coli 3-(3-hydroxyphenyl)propionate hydroxylase (AAC73450.1); Blastp hit to AAC73450.1 (554 aa), 25% identity in aa 12 - 342.
  
  
 0.556
hpaH
4-hydroxyphenylacetate catabolism protein; Similar to E. coli 2-keto-4-pentenoate hydratase (AAC73453.1); Blastp hit to AAC73453.1 (271 aa), 34% identity in aa 6 - 261.
 
  
 0.527
STM3132
Putative xylanase; Chitin deacetylase.
  
     0.477
STM0332
Putative hydrolase or acyltransferase; Similar to E. coli orf, hypothetical protein (AAC73780.1); Blastp hit to AAC73780.1 (254 aa), 33% identity in aa 15 - 129.
 
 0.443
yjhP
Similar to E. coli putative methyltransferase (AAC77262.1); Blastp hit to AAC77262.1 (248 aa), 30% identity in aa 1 - 138.
   
 0.440
ubiG
3-demethylubiquinone-9 3-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family.
 
 
 0.424
STM1548
Putative S-adenosylmethionine:tRNA-ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).
  
    0.407
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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