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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yncJPutative periplasmic protein; Similar to E. coli orf, hypothetical protein (AAC74518.1); Blastp hit to AAC74518.1 (76 aa), 76% identity in aa 1 - 73. (76 aa)    
Predicted Functional Partners:
yjfN
Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC77145.1); Blastp hit to AAC77145.1 (100 aa), 80% identity in aa 7 - 100.
      
 0.833
ssaE
Secretion system effector; Putative secretory apparatus component (gi|3377860).
   
    0.690
yebE
Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC74916.1); Blastp hit to AAC74916.1 (219 aa), 86% identity in aa 1 - 217.
   
  
 0.615
yhfC
Putative MFS family transport protein; Similar to E. coli putative transport (AAC76389.1); Blastp hit to AAC76389.1 (393 aa), 90% identity in aa 1 - 393.
      
 0.459
ygjT
Putative resistance protein; Has been proposed to be a redox modulator. Belongs to the TerC family.
      
 0.452
yceI
Putative secreted protein; Similar to E. coli orf, hypothetical protein (AAC74140.1); Blastp hit to AAC74140.1 (191 aa), 91% identity in aa 1 - 191.
      
 0.451
sifB
Salmonella translocated effector: translocated by SPI-2; Effector proteins function to alter host cell physiology and promote bacterial survival in host tissues; Belongs to the Sif family.
  
    0.451
ybgC
Putative esterase; Similar to E. coli orf, hypothetical protein (AAC73830.1); Blastp hit to AAC73830.1 (134 aa), 92% identity in aa 1 - 134.
      
 0.450
ssaH
Secretion system apparatus; SsaH (gi|3776128).
   
    0.400
ssaI
Secretion system apparatus; SsaI (gi|3776129).
   
    0.400
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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