STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sgcXPutative cellulase protein; Similar to E. coli putative lyase/synthase (AAC77261.1); Blastp hit to AAC77261.1 (383 aa), 84% identity in aa 11 - 382. (372 aa)    
Predicted Functional Partners:
STM1615
Similar to E. coli putative nucleoside triphosphatase (AAC77259.1); Blastp hit to AAC77259.1 (268 aa), 92% identity in aa 1 - 268.
 
  
 0.892
ydhI
Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC74715.1); Blastp hit to AAC74715.1 (78 aa), 76% identity in aa 1 - 78.
   
  
 0.860
yjiO
Similar to E. coli putative transport protein (AAC77293.1); Blastp hit to AAC77293.1 (410 aa), 86% identity in aa 3 - 410.
      
 0.858
STM1614
Similar to E. coli putative PTS system enzyme IIC component (AAC77260.1); Blastp hit to AAC77260.1 (437 aa), 94% identity in aa 1 - 437.
 
    0.855
STM1613
Putative PTS system, enzymeIIB component; Similar to E. coli galactitol-specific enzyme IIB of phosphotransferase system (AAC75154.1); Blastp hit to AAC75154.1 (94 aa), 34% identity in aa 1 - 92.
 
    0.832
yecH
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC74976.1); Blastp hit to AAC74976.1 (79 aa), 87% identity in aa 1 - 79.
      
 0.818
leuO
Putative LysR family transcriptional regulator; Probable activator protein in leuabcd operon. (SW:LEUO_SALTY); Belongs to the LysR transcriptional regulatory family.
      
 0.717
slyA
MarR family transcriptional regulator for hemolysin; Transcription regulator that can specifically activate or repress expression of target genes. Required for virulence and survival in the macrophage environment. Probably activates expression of ispA, xseB genes, and of omp operon.
  
  
 0.602
STM1618
Putative DeoR family transcriptional repressor of sgc operon; Similar to E. coli putative DEOR-type transcriptional regulator (AAC77256.1); Blastp hit to AAC77256.1 (260 aa), 89% identity in aa 1 - 255.
  
    0.590
STM1616
Similar to E. coli putative PTS system enzyme II A component (AAC77258.1); Blastp hit to AAC77258.1 (143 aa), 73% identity in aa 1 - 139.
  
  
 0.555
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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