STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
STM1674Putative AraC family bacterial regulatory helix-turn-helix protein; Similar to E. coli orf, hypothetical protein (AAC77208.1); Blastp hit to AAC77208.1 (84 aa), 46% identity in aa 1 - 84. (196 aa)    
Predicted Functional Partners:
STM1675
Putative short-chain alcohol dehydrogenase; Similar to E. coli putative oxidoreductase (AAC77206.1); Blastp hit to AAC77206.1 (237 aa), 80% identity in aa 1 - 237.
 
  
 0.927
STM1673
Putative outer membrane lipoprotein; Similar to E. coli orf, hypothetical protein (AAC75872.1); Blastp hit to AAC75872.1 (72 aa), 33% identity in aa 1 - 71.
  
    0.732
rfbJ
LPS side chain defect; CDP-abequose synthase. (SW:RFBJ_SALTY).
      
 0.715
STM1551
Putative cytoplasmic protein.
      
 0.672
STM1669
Invasin-like protein; Homology to invasin C of Yersinia; similar to E. coli putative factor (AAC74304.1); Blastp hit to AAC74304.1 (417 aa), 30% identity in aa 38 - 403.
   
    0.662
nadD
Putative nicotinic acid mononucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
   
  
 0.648
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Involved in lambda inhibition of host protein synthesis. PTH activity may, directly or indirectly, be the target for lambda bar RNA leading to rap cell death (By similarity).
   
  
 0.595
yhdN
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC76318.1); Blastp hit to AAC76318.1 (122 aa), 86% identity in aa 1 - 122.
   
  
 0.544
nemA
Similar to E. coli N-ethylmaleimide reductase (AAC74722.1); Blastp hit to AAC74722.1 (365 aa), 92% identity in aa 1 - 365.
  
  
 0.496
STM2475
Putative cytoplasmic protein.
      
 0.481
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.