Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sohBSimilar to E. coli putative protease (AAC74354.1); Blastp hit to AAC74354.1 (349 aa), 87% identity in aa 1 - 349. (348 aa)    
Predicted Functional Partners:
yciK
Putative oxoacyl-(acyl carrier protein) reductase; Similar to E. coli putative oxidoreductase (AAC74353.1); Blastp hit to AAC74353.1 (252 aa), 88% identity in aa 1 - 252.
 
  
 0.933
yjeM
Putative APC family amino-acid transport protein; Hypothetical protein in poxA-psd intergenic region. (SW:YJEM_SALTY).
      
 0.881
msyB
Similar to E. coli acidic protein suppresses mutants lacking function of protein export (AAC74135.1); Blastp hit to AAC74135.1 (125 aa), 92% identity in aa 2 - 125.
   
  
 0.731
visC
Putative monooxygenase; Similar to E. coli orf, hypothetical protein (AAC75944.1); Blastp hit to AAC75944.1 (400 aa), 87% identity in aa 1 - 400.
      
 0.727
ygfY
Putative cytoplasmic protein; An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH and other flavinylated proteins as well.
  
     0.661
ymdA
Putative periplasmic protein; Hypothetical protein in csgC-mdoG intergenic region precursor. (SW:YMDA_SALTY); To the N-terminal of the FimA/PapA family of fimbria proteins.
      
 0.645
hybB
Similar to E. coli probable cytochrome Ni/Fe component of hydrogenase-2 (AAC76031.1); Blastp hit to AAC76031.1 (392 aa), 96% identity in aa 1 - 392.
      
 0.643
btuR
cob(I)alamin and cobinamide adenolsyltransferase; Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids; Belongs to the Cob(I)alamin adenosyltransferase family.
  
  
 0.495
mazG
Putative pyrophosphatase; Similar to E. coli orf, hypothetical protein (AAC75823.1); Blastp hit to AAC75823.1 (263 aa), 93% identity in aa 2 - 263.
     
 0.478
yqiB
Putative cytoplasmic protein; Similar to E. coli putative enzyme (AAC76069.1); Blastp hit to AAC76069.1 (140 aa), 95% identity in aa 1 - 140.
  
     0.459
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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