STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yciFSimilar to E. coli putative structural proteins (AAC74340.1); Blastp hit to AAC74340.1 (166 aa), 86% identity in aa 1 - 166. (167 aa)    
Predicted Functional Partners:
yciE
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC74339.1); Blastp hit to AAC74339.1 (168 aa), 85% identity in aa 1 - 168.
 
  
 0.999
STM1731
Putative catalase (gi|7162108).
    0.999
yciG
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC74341.1); Blastp hit to AAC74341.1 (78 aa), 88% identity in aa 20 - 78.
  
  
 0.915
gns
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC74623.1); Blastp hit to AAC74623.1 (58 aa), 56% identity in aa 2 - 58; Belongs to the gns family.
   
  
 0.897
yibT
Putative cytoplasmic protein.
      
 0.897
ygaU
Putative LysM domain protein; Similar to E. coli orf, hypothetical protein (AAC75712.1); Blastp hit to AAC75712.1 (149 aa), 93% identity in aa 1 - 149.
   
  
 0.813
yehY
Putative ABC-type proline/glycine betaine transport system, permease component; Similar to E. coli putative transport system permease protein (AAC75191.1); Blastp hit to AAC75191.1 (385 aa), 76% identity in aa 6 - 385.
   
  
 0.777
katE
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
 
  
 0.729
ppiC
Peptidyl-prolyl cis-trans isomerase C; PPIases accelerate the folding of proteins. It prefers amino acid residues with hydrophobic side chains like leucine and phenylalanine in the P1 position of the peptides substrates (By similarity).
      
 0.711
yhjY
Similar to E. coli putative lipase (AAC76572.1); Blastp hit to AAC76572.1 (234 aa), 72% identity in aa 3 - 234.
      
 0.697
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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