Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yciCPutative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC74337.1); Blastp hit to AAC74337.1 (247 aa), 87% identity in aa 1 - 247. (247 aa)    
Predicted Functional Partners:
yciB
Putative intracellular septation protein; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.
 
    0.958
yciA
Putative Acyl-CoA hydrolase; Catalyzes the hydrolysis of the thioester bond in palmitoyl- CoA and malonyl-CoA.
 
  
 0.941
yaiY
Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC73482.1); Blastp hit to AAC73482.1 (102 aa), 86% identity in aa 1 - 102.
      
 0.790
STM3021
Putative inner membrane protein.
      
 0.747
STM1733
Similar to E. coli putative ferredoxin (AAC73391.1); Blastp hit to AAC73391.1 (109 aa), 74% identity in aa 1 - 109.
  
    0.743
yceA
Putative enzyme related to sulfur transferases; Similar to E. coli orf, hypothetical protein (AAC74139.1); Blastp hit to AAC74139.1 (350 aa), 88% identity in aa 1 - 350; Belongs to the UPF0176 family.
   
  
 0.691
yqhA
Putative membrane-associated protein; Similar to E. coli orf, hypothetical protein (AAC76038.1); Blastp hit to AAC76038.1 (164 aa), 94% identity in aa 1 - 164.
      
 0.674
yicS
Putative inner membrane protein.
      
 0.648
ygdI
Putative lipoprotein; Similar to E. coli orf, hypothetical protein (AAC75851.1); Blastp hit to AAC75851.1 (76 aa), 93% identity in aa 2 - 75.
      
 0.645
yfgM
Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC75566.1); Blastp hit to AAC75566.1 (206 aa), 88% identity in aa 1 - 206.
   
  
 0.544
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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