STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ychEPutative MarC family integral membrane protein; Similar to E. coli putative channel protein (AAC74324.1); Blastp hit to AAC74324.1 (215 aa), 93% identity in aa 1 - 215. (215 aa)    
Predicted Functional Partners:
ynfM
Similar to E. coli putative transport protein (AAC74668.1); Blastp hit to AAC74668.1 (417 aa), 91% identity in aa 1 - 417.
      
 0.891
yhgN
Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC76459.1); Blastp hit to AAC76459.1 (197 aa), 72% identity in aa 4 - 39.
      
 0.762
yhcC
Putative FeS oxidoreductase; Similar to E. coli orf, hypothetical protein (AAC76243.1); Blastp hit to AAC76243.1 (309 aa), 94% identity in aa 1 - 307.
      
 0.720
yqhA
Putative membrane-associated protein; Similar to E. coli orf, hypothetical protein (AAC76038.1); Blastp hit to AAC76038.1 (164 aa), 94% identity in aa 1 - 164.
   
  
 0.704
yhcG
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC76252.1); Blastp hit to AAC76252.1 (375 aa), 55% identity in aa 115 - 164.
      
 0.700
yajR
Putative MFS family transporter; Similar to E. coli putative transport protein (AAC73530.1); Blastp hit to AAC73530.1 (456 aa), 89% identity in aa 8 - 453.
   
  
 0.687
ydiK
Putative permease; Similar to E. coli orf, hypothetical protein (AAC74758.1); Blastp hit to AAC74758.1 (370 aa), 89% identity in aa 1 - 370.
     
 0.687
ytfL
Similar to E. coli putative transport protein (AAC77175.1); Blastp hit to AAC77175.1 (447 aa), 91% identity in aa 1 - 447.
      
 0.663
perM
Similar to E. coli putative permease (AAC75546.1); Blastp hit to AAC75546.1 (353 aa), 94% identity in aa 1 - 350.
     
 0.584
yoaE
Similar to E. coli putative transport protein (AAC74886.1); Blastp hit to AAC74886.1 (518 aa), 90% identity in aa 1 - 518.
   
  
 0.495
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.