Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
STM1849Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC74904.1); Blastp hit to AAC74904.1 (879 aa), 90% identity in aa 1 - 879. (879 aa)    
Predicted Functional Partners:
yebS
Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC74903.1); Blastp hit to AAC74903.1 (427 aa), 85% identity in aa 1 - 427.
 
 0.996
yebU
Putative rRNA methyltransferase; Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA.
 
    0.873
pqiA
Similar to E. coli paraquat-inducible protein A (AAC74036.1); Blastp hit to AAC74036.1 (417 aa), 89% identity in aa 1 - 417.
 
 
 0.869
yebR
Putative GAF domain-containing protein; Similar to E. coli orf, hypothetical protein (AAC74902.1); Blastp hit to AAC74902.1 (183 aa), 83% identity in aa 11 - 183.
  
   0.604
ygfB
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC75947.1); Blastp hit to AAC75947.1 (194 aa), 93% identity in aa 1 - 194; Belongs to the UPF0149 family.
 
     0.600
ycjI
Similar to E. coli putative carboxypeptidase (AAC74408.1); Blastp hit to AAC74408.1 (262 aa), 90% identity in aa 21 - 262.
  
    0.584
mltB
Similar to E. coli membrane-bound lytic murein transglycosylase B (AAC75743.1); Blastp hit to AAC75743.1 (361 aa), 92% identity in aa 1 - 361.
  
     0.566
yccR
Putative DNA transformation protein; Similar to E. coli orf, hypothetical protein (AAC74045.1); Blastp hit to AAC74045.1 (209 aa), 75% identity in aa 1 - 199.
  
     0.552
yecM
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC74945.1); Blastp hit to AAC74945.1 (190 aa), 84% identity in aa 3 - 190.
  
     0.533
STM1607
Putative outer membrane lipoprotein; Similar to E. coli orf, hypothetical protein (AAC74513.1); Blastp hit to AAC74513.1 (222 aa), 84% identity in aa 1 - 222.
 
    0.520
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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