mig-3 protein (Salmonella enterica Typhimurium)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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Score

mig-3

Phage tail assembly protein (gi|2460256). (293 aa)

Predicted Functional Partners:

STM1868A

0.764

STM0926

0.609

STM1049

0.599

STM0344

0.579

STM1926

0.579

STM2588

0.558

ybdN

0.462

lpfA

0.452

virK

0.450

Your Current Organism:

Salmonella enterica Typhimurium

NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
STM0344	STM1868A	STM0344	STM1868A	Putative response regulator.	Lytic enzyme.	0.762
STM0344	STM1926	STM0344	STM1926	Putative response regulator.	Putative cytoplasmic protein.	0.898
STM0344	mig-3	STM0344	STM1868	Putative response regulator.	Phage tail assembly protein (gi\|2460256).	0.579
STM0926	mig-3	STM0926	STM1868	Putative Fels-1 prophage minor tail protein; Similar to E. coli putative membrane protein (AAC74454.1); Blastp hit to AAC74454.1 (1122 aa), 50% identity in aa 3 - 515, 57% identity in aa 878 - 1084, 43% identity in aa 1008 - 1122, 34% identity in aa 354 - 568, 29-1073758628dentity in aa 116 - 346, 24% identity in aa 962 - 1111, 26-1073758654dentity in aa 940 - 1106, 27% identity in aa 420 - 581, 23% identity in aa 959 - 1113, 23% identity in aa 961 - 1079, 30% identity in aa 778 - 829, 22% identity in aa 778 - 850.	Phage tail assembly protein (gi\|2460256).	0.609
STM1049	mig-3	STM1049	STM1868	Gifsy-2 prophage probable tail fiber protein; Similar to E. coli putative membrane protein (AAC74454.1); Blastp hit to AAC74454.1 (1122 aa), 49% identity in aa 3 - 549, 57% identity in aa 878 - 1084, 43% identity in aa 1008 - 1122, 32% identity in aa 354 - 568, 26-1073758628dentity in aa 961 - 1111, 24% identity in aa 959 - 1113, 27-1073758654dentity in aa 940 - 1106, 26% identity in aa 766 - 829, 36% identity in aa 822 - 851.	Phage tail assembly protein (gi\|2460256).	0.599
STM1868A	STM0344	STM1868A	STM0344	Lytic enzyme.	Putative response regulator.	0.762
STM1868A	STM1926	STM1868A	STM1926	Lytic enzyme.	Putative cytoplasmic protein.	0.762
STM1868A	mig-3	STM1868A	STM1868	Lytic enzyme.	Phage tail assembly protein (gi\|2460256).	0.764
STM1926	STM0344	STM1926	STM0344	Putative cytoplasmic protein.	Putative response regulator.	0.898
STM1926	STM1868A	STM1926	STM1868A	Putative cytoplasmic protein.	Lytic enzyme.	0.762
STM1926	mig-3	STM1926	STM1868	Putative cytoplasmic protein.	Phage tail assembly protein (gi\|2460256).	0.579
STM2588	mig-3	STM2588	STM1868	Gifsy-1 prophage protein; Similar to tail fiber-like protein; similar to E. coli putative membrane protein (AAC74454.1); Blastp hit to AAC74454.1 (1122 aa), 49% identity in aa 3 - 515, 56% identity in aa 878 - 1084, 42% identity in aa 1008 - 1122, 33% identity in aa 354 - 568, 26-1073758628dentity in aa 116 - 345, 26% identity in aa 961 - 1111, 26-1073758654dentity in aa 940 - 1106, 25% identity in aa 766 - 828, 26% identity in aa 778 - 841.	Phage tail assembly protein (gi\|2460256).	0.558
lpfA	mig-3	STM3640	STM1868	Long polar fimbria protein A precursor. (SW:LPFA_SALTY).	Phage tail assembly protein (gi\|2460256).	0.452
mig-3	STM0344	STM1868	STM0344	Phage tail assembly protein (gi\|2460256).	Putative response regulator.	0.579
mig-3	STM0926	STM1868	STM0926	Phage tail assembly protein (gi\|2460256).	Putative Fels-1 prophage minor tail protein; Similar to E. coli putative membrane protein (AAC74454.1); Blastp hit to AAC74454.1 (1122 aa), 50% identity in aa 3 - 515, 57% identity in aa 878 - 1084, 43% identity in aa 1008 - 1122, 34% identity in aa 354 - 568, 29-1073758628dentity in aa 116 - 346, 24% identity in aa 962 - 1111, 26-1073758654dentity in aa 940 - 1106, 27% identity in aa 420 - 581, 23% identity in aa 959 - 1113, 23% identity in aa 961 - 1079, 30% identity in aa 778 - 829, 22% identity in aa 778 - 850.	0.609
mig-3	STM1049	STM1868	STM1049	Phage tail assembly protein (gi\|2460256).	Gifsy-2 prophage probable tail fiber protein; Similar to E. coli putative membrane protein (AAC74454.1); Blastp hit to AAC74454.1 (1122 aa), 49% identity in aa 3 - 549, 57% identity in aa 878 - 1084, 43% identity in aa 1008 - 1122, 32% identity in aa 354 - 568, 26-1073758628dentity in aa 961 - 1111, 24% identity in aa 959 - 1113, 27-1073758654dentity in aa 940 - 1106, 26% identity in aa 766 - 829, 36% identity in aa 822 - 851.	0.599
mig-3	STM1868A	STM1868	STM1868A	Phage tail assembly protein (gi\|2460256).	Lytic enzyme.	0.764
mig-3	STM1926	STM1868	STM1926	Phage tail assembly protein (gi\|2460256).	Putative cytoplasmic protein.	0.579
mig-3	STM2588	STM1868	STM2588	Phage tail assembly protein (gi\|2460256).	Gifsy-1 prophage protein; Similar to tail fiber-like protein; similar to E. coli putative membrane protein (AAC74454.1); Blastp hit to AAC74454.1 (1122 aa), 49% identity in aa 3 - 515, 56% identity in aa 878 - 1084, 42% identity in aa 1008 - 1122, 33% identity in aa 354 - 568, 26-1073758628dentity in aa 116 - 345, 26% identity in aa 961 - 1111, 26-1073758654dentity in aa 940 - 1106, 25% identity in aa 766 - 828, 26% identity in aa 778 - 841.	0.558
mig-3	lpfA	STM1868	STM3640	Phage tail assembly protein (gi\|2460256).	Long polar fimbria protein A precursor. (SW:LPFA_SALTY).	0.452

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