STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
STM1871Similar to E. coli prophage e14 integrase (AAC74224.1); Blastp hit to AAC74224.1 (375 aa), 39% identity in aa 78 - 366; Belongs to the 'phage' integrase family. (298 aa)    
Predicted Functional Partners:
STM1870
recE-like protein; Similar to E. coli exonuclease VIII, ds DNA exonuclease, 5' --> 3' specific (AAC74432.1); Blastp hit to AAC74432.1 (866 aa), 52% identity in aa 406 - 521, 20% identity in aa 543 - 585.
  
  
 0.748
STM2603
Gifsy-1 prophage protein; Similar to head protein gp7 of phage 21.
  
     0.650
STM0018
Putative exochitinase.
  
    0.640
stcC
Similar to E. coli putative outer membrane protein (AAC75170.1); Blastp hit to AAC75170.1 (826 aa), 74% identity in aa 1 - 826.
  
     0.627
STM0016
Hypothetical protein.
  
     0.609
bcfF
Fimbrial subunit (gi|4959516).
  
     0.607
STM4309
Putative periplasmic or exported protein.
  
     0.600
STM2608
Gifsy-1 prophage protein; Similar to terminase large chain gp2 of N15; similar to E. coli orf, hypothetical protein (AAC73662.1); Blastp hit to AAC73662.1 (247 aa), 53% identity in aa 7 - 132.
  
     0.593
STM0156
Putative periplasmic protein.
  
 
   0.587
bcfA
Fimbrial subunit (gi|4959511).
  
     0.583
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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