Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
STM1874Similar to E. coli putative resistance protein (AAC74910.1); Blastp hit to AAC74910.1 (290 aa), 64% identity in aa 1 - 290. (291 aa)    
Predicted Functional Partners:
yobA
Similar Cu resistance protein CopC; Similar to E. coli orf, hypothetical protein (AAC74911.1); Blastp hit to AAC74911.1 (124 aa), 74% identity in aa 1 - 124.
 
  
 0.958
STM1873
Putative periplasmic or exported protein; Similar to E. coli orf, hypothetical protein (AAC74909.1); Blastp hit to AAC74909.1 (113 aa), 82% identity in aa 2 - 113.
  
  
 0.878
pgpB
Similar to E. coli non-essential phosphatidylglycerophosphate phosphatase, membrane bound (AAC74360.1); Blastp hit to AAC74360.1 (254 aa), 82% identity in aa 1 - 254.
  
    0.610
STM1872
Putative cytoplasmic protein.
       0.610
ygaM
Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC75719.1); Blastp hit to AAC75719.1 (113 aa), 86% identity in aa 1 - 112.
  
     0.578
holE
Similar to E. coli DNA polymerase III, theta subunit (AAC74912.1); Blastp hit to AAC74912.1 (76 aa), 88% identity in aa 1 - 76.
  
    0.542
yhhN
Putative inner membrane protein; Similar to E. coli putative enzyme (AAC76493.1); Blastp hit to AAC76493.1 (208 aa), 91% identity in aa 1 - 208.
  
     0.536
ybaP
Putative cytoplasmic protein; Similar to E. coli putative ligase (AAC73584.1); Blastp hit to AAC73584.1 (264 aa), 66% identity in aa 1 - 264.
  
     0.521
exoX
DNA exonuclease X; Degrades ss and ds DNA with 3'-5' polarity; similar to E. coli orf, hypothetical protein (AAC74914.1); Blastp hit to AAC74914.1 (220 aa), 90% identity in aa 1 - 219.
 
    0.502
spy
Similar to E. coli periplasmic protein related to spheroblast formation (AAC74813.1); Blastp hit to AAC74813.1 (161 aa), 89% identity in aa 1 - 161.
 
     0.469
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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