Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
STM1911Putative cytoplasmic protein. (379 aa)    
Predicted Functional Partners:
kduI
Putative pectin degrading enzyme; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
  
 0.743
STM1561
Putative outer membrane or secreted lipoprotein.
  
     0.584
STM1856
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC74245.1); Blastp hit to AAC74245.1 (134 aa), 40% identity in aa 1 - 127.
      
 0.579
STM1678
Putative 2'-hydroxyisoflavone reductase.
  
    0.516
STM0041
Putative glycosyl hydrolase; Similar to E. coli orf, hypothetical protein (AAC76680.1); Blastp hit to AAC76680.1 (772 aa), 25% identity in aa 116 - 547, 27% identity in aa 549 - 665, 25% identity in aa 84 - 149; Belongs to the glycosyl hydrolase 31 family.
 
    0.515
STM1623
Putative carboxylesterase; Belongs to the type-B carboxylesterase/lipase family.
  
     0.488
STM0148
Putative cytoplasmic protein; Hypothetical protein (gi|7688348); Belongs to the glycosyl hydrolase 43 family.
  
     0.486
kduD
Similar to E. coli 2-deoxy-D-gluconate 3-dehydrogenase (AAC75881.1); Blastp hit to AAC75881.1 (253 aa), 93% identity in aa 1 - 253; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
   
 0.486
STM2011
Putative cytoplasmic protein.
      
 0.473
STM2914
Putative nucleoside-diphosphate-sugar epimerase; Similar to E. coli UDP-galactose-4-epimerase (AAC73846.1); Blastp hit to AAC73846.1 (338 aa), 25% identity in aa 1 - 162.
  
     0.454
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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