STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yedDPutative outer membrane lipoprotein; Hypothetical 15.5 Kda protein in amyA-fliE intergenic region. (SW:YEDD_SALTY). (141 aa)    
Predicted Functional Partners:
yiaF
Putative outer membrane lipoprotein; Similar to E. coli orf, hypothetical protein (AAC76578.1); Blastp hit to AAC76578.1 (276 aa), 88% identity in aa 41 - 276.
      
 0.896
ytfM
Putative outer membrane protein; Similar to E. coli orf, hypothetical protein (AAC77177.1); Blastp hit to AAC77177.1 (577 aa), 90% identity in aa 3 - 577.
      
 0.853
yajG
Similar to E. coli putative polymerase/proteinase (AAC73537.1); Blastp hit to AAC73537.1 (226 aa), 85% identity in aa 20 - 226.
   
  
 0.850
ydiY
Putative salt-induced outer membrane protein; Similar to E. coli orf, hypothetical protein (AAC74792.1); Blastp hit to AAC74792.1 (252 aa), 88% identity in aa 1 - 252.
      
 0.767
rlpB
A minor lipoprotein; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane; Belongs to the LptE lipoprotein family.
   
 
 0.764
ynfB
Putative periplasmic protein; Similar to E. coli orf, hypothetical protein (AAC74655.1); Blastp hit to AAC74655.1 (113 aa), 81% identity in aa 1 - 113; Belongs to the UPF0482 family.
      
 0.740
yohG
Putative outer membrane efflux protein; Similar to E. coli putative channel/filament proteins (AAC75199.1); Blastp hit to AAC75199.1 (398 aa), 85% identity in aa 1 - 396.
      
 0.677
imp
Organic solvent tolerance protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
    
   0.635
yedF
Putative transcriptional regulator; Hypothetical 8.6 Kda protein in amyA-fliE intergenic region (ORF 9). (SW:YEDF_ECOLI); Belongs to the sulfur carrier protein TusA family.
  
    0.588
yedE
Putative membrane component of transport system; Hypothetical 44.2 Kda protein in amyA-fliE intergenic region. (SW:YEDE_SALTY).
  
    0.551
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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