Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yodDPutative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC75020.1); Blastp hit to AAC75020.1 (80 aa), 92% identity in aa 6 - 80. (75 aa)    
Predicted Functional Partners:
yceO
Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC74142.1); Blastp hit to AAC74142.1 (46 aa), 64% identity in aa 10 - 46.
   
  
 0.861
yedP
Putative hydrolase of the HAD superfamily; Similar to E. coli orf, hypothetical protein (AAC75021.1); Blastp hit to AAC75021.1 (271 aa), 75% identity in aa 1 - 269.
  
    0.703
uspB
Universal stress protein B; Involved in stationary-phase resistance to ethanol; similar to E. coli orf, hypothetical protein (AAC76519.1); Blastp hit to AAC76519.1 (111 aa), 95% identity in aa 1 - 111.
   
  
 0.627
STM1851
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC74906.1); Blastp hit to AAC74906.1 (83 aa), 88% identity in aa 6 - 83.
   
   0.622
ycgB
Similar to E. coli putative sporulation protein (AAC74272.1); Blastp hit to AAC74272.1 (510 aa), 96% identity in aa 1 - 510.
   
  
 0.611
ygaU
Putative LysM domain protein; Similar to E. coli orf, hypothetical protein (AAC75712.1); Blastp hit to AAC75712.1 (149 aa), 93% identity in aa 1 - 149.
   
  
 0.582
yiaG
Putative transcriptional regulator; Similar to E. coli orf, hypothetical protein (AAC76579.1); Blastp hit to AAC76579.1 (96 aa), 79% identity in aa 1 - 96.
   
    0.522
phnB
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC77068.1); Blastp hit to AAC77068.1 (147 aa), 83% identity in aa 1 - 145.
   
    0.503
fic
Putative cell filamentation protein; Probable adenylyltransferase that mediates the addition of adenosine 5'-monophosphate (AMP) to specific residues of target proteins (By similarity). Involved in cell filamentation induced by cyclic AMP.
   
    0.502
STM4033
Putative merR family bacterial regulatory protein.
   
    0.500
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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