STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
STM2005Putative endoprotease. (157 aa)    
Predicted Functional Partners:
STM0281
Putative cytoplasmic protein.
      
 0.939
STM1870
recE-like protein; Similar to E. coli exonuclease VIII, ds DNA exonuclease, 5' --> 3' specific (AAC74432.1); Blastp hit to AAC74432.1 (866 aa), 52% identity in aa 406 - 521, 20% identity in aa 543 - 585.
      
 0.939
yiiG
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC76878.1); Blastp hit to AAC76878.1 (351 aa), 67% identity in aa 15 - 351.
      
 0.939
STM2486
Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC75528.1); Blastp hit to AAC75528.1 (287 aa), 92% identity in aa 1 - 286.
      
 0.938
STM1791
Putative hydrogenase-1 protein; Similar to E. coli nickel incorporation into hydrogenase-1 proteins (AAC74062.1); Blastp hit to AAC74062.1 (285 aa), 75% identity in aa 1 - 279.
      
 0.897
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.