STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
STM2007Putative TPR repeat protein; Similar to E. coli orf, hypothetical protein (AAC73745.1); Blastp hit to AAC73745.1 (327 aa), 32% identity in aa 130 - 322, 32% identity in aa 60 - 242, 32% identity in aa 17 - 168, 33% identity in aa 59 - 204, 23-1073758628dentity in aa 23 - 106. (564 aa)    
Predicted Functional Partners:
STM2008
Putative periplasmic protein.
  
    0.836
STM0437
Putative periplasmic protein; Similar to E. coli orf, hypothetical protein (AAC73748.1); Blastp hit to AAC73748.1 (184 aa), 38% identity in aa 61 - 150, 32% identity in aa 22 - 151, 36% identity in aa 57 - 131, 38% identity in aa 123 - 175, 30-1073758628dentity in aa 105 - 164, 22% identity in aa 10 - 129.
  
    0.801
STM0438
Putative TPR repeat protein; Similar to E. coli orf, hypothetical protein (AAC73748.1); Blastp hit to AAC73748.1 (184 aa), 35% identity in aa 77 - 179, 33% identity in aa 56 - 171.
  
    0.790
yjcO
Putative TPR repeat protein; Similar to E. coli orf, hypothetical protein (AAD13461.1); Blastp hit to AAD13461.1 (229 aa), 88% identity in aa 1 - 229.
  
     0.582
STM0282
Similar to E. coli putative outer membrane protein (AAC76576.1); Blastp hit to AAC76576.1 (219 aa), 44% identity in aa 145 - 214.
  
 
 0.504
STM0273
Putative cytoplasmic protein.
     
 0.461
nfi
Endonuclease V; DNA repair enzyme involved in the repair of deaminated bases. Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA.
  
  
 0.460
ybeV
Putative molecular chaperone, DnaJ family; Similar to E. coli orf, hypothetical protein (AAC73750.1); Blastp hit to AAC73750.1 (483 aa), 58% identity in aa 1 - 434.
  
   0.429
hcaT
Similar to E. coli MFS (major facilitator superfamily) transporter (AAC75589.1); Blastp hit to AAC75589.1 (379 aa), 88% identity in aa 1 - 376.
  
     0.421
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.