Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
STM2010Putative cytoplasmic protein. (53 aa)    
Predicted Functional Partners:
STM0699
Putative cytoplasmic protein.
      
 0.859
STM4595
Putative fimbrial chaparone protein; Similar to E. coli fimbrial morphology (AAC77274.1); Blastp hit to AAC77274.1 (176 aa), 29% identity in aa 1 - 176.
      
 0.858
STM2880
Putative cytoplasmic protein.
      
 0.820
sthE
Putative major fimbrial subunit.
      
 0.726
tctD
Tricarboxylic transport regulatory protein; Transcriptional activator of the tctI tricarboxylate transport system operon.
      
 0.724
STM0551
Putative diguanylate cyclase/phosphodiesterase domain 0.
      
 0.717
amn
AMP nucleosidase; Catalyzes the hydrolysis of the N-glycosidic bond of AMP to form adenine and ribose 5-phosphate. Involved in regulation of AMP concentrations.
       0.566
yibR
Putative inner membrane protein; Hypothetical 9.0 Kda protein in rfaB-rfaP intergenic region. (SW:YIBR_SALTY).
      
 0.450
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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