STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
STM2011Putative cytoplasmic protein. (108 aa)    
Predicted Functional Partners:
STM2570
Putative phosphotransferase system IIB components; Similar to E. coli putative PTS enzyme II (AAC75482.1); Blastp hit to AAC75482.1 (474 aa), 38% identity in aa 6 - 467.
      
 0.939
STM1856
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC74245.1); Blastp hit to AAC74245.1 (134 aa), 40% identity in aa 1 - 127.
      
 0.893
ygdB
Putative periplasmic protein; Similar to E. coli orf, hypothetical protein (AAC75863.1); Blastp hit to AAC75863.1 (121 aa), 52% identity in aa 1 - 121.
      
 0.893
STM2231
ssrB-regulated factor; Similar to msgA; virulence protein msga (SW:MSGA_SALTY).
      
 0.891
hpaX
4-hydroxyphenylacetate catabolism protein; Similar to E. coli putative transport protein (AAC75306.1); Blastp hit to AAC75306.1 (442 aa), 31% identity in aa 22 - 428.
      
 0.802
yieP
Putative gntR family regulatory protein; Similar to E. coli orf, hypothetical protein (AAC76778.1); Blastp hit to AAC76778.1 (181 aa), 82% identity in aa 1 - 181.
      
 0.761
ecnR
Putative luxR family bacterial regulatory protein.
   
  
 0.718
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
      
 0.700
yfdZ
Similar to E. coli putative aminotransferase (AAC75438.1); Blastp hit to AAC75438.1 (412 aa), 95% identity in aa 1 - 412.
      
 0.578
yjeK
Putative aminomutase; With EpmA is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF- P) on 'Lys-34'. EpmB appears to act before EpmA. Displays lysine 2,3- aminomutase activity, producing (R)-beta-lysine from (S)-alpha-lysine (L-lysine) (By similarity).
      
 0.578
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.