Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yeeXSimilar to E. coli putative alpha helix protein (AAC75068.1); Blastp hit to AAC75068.1 (131 aa), 93% identity in aa 23 - 131; Belongs to the UPF0265 family. (111 aa)    
Predicted Functional Partners:
yhgF
Putative RNase R; Similar to E. coli orf, hypothetical protein (AAC76432.1); Blastp hit to AAC76432.1 (740 aa), 94% identity in aa 1 - 740.
      
 0.896
yjgA
Similar to E. coli putative alpha helix protein (AAC77191.1); Blastp hit to AAC77191.1 (183 aa), 95% identity in aa 1 - 183; Belongs to the UPF0307 family.
   
  
 0.895
ybcJ
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC73630.1); Blastp hit to AAC73630.1 (77 aa), 92% identity in aa 8 - 77.
      
 0.860
yhbY
Putative RNA-binding protein; Contains KH domain; similar to E. coli orf, hypothetical protein (AAC76212.1); Blastp hit to AAC76212.1 (97 aa), 95% identity in aa 1 - 97.
      
 0.853
yceF
Putative inhibitor of septum formation; Nucleoside triphosphate pyrophosphatase that hydrolyzes 7- methyl-GTP (m(7)GTP). May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
   
  
 0.792
yhdE
Putative inhibitor of septum formation; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
      
 0.751
psd
Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
    
   0.721
pfkA
6-phosphofructokinase I; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis.
 
    0.720
yihI
Putative cytoplasmic protein; A GTPase-activating protein (GAP) that modifies Der/EngA GTPase function. May play a role in ribosome biogenesis. Belongs to the YihI family.
      
 0.673
yibL
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC76626.1); Blastp hit to AAC76626.1 (120 aa), 90% identity in aa 1 - 120.
   
  
 0.651
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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