Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yfeRSimilar to E. coli putative transcriptional regulator LYSR-type (AAC75462.1); Blastp hit to AAC75462.1 (308 aa), 79% identity in aa 1 - 308; Belongs to the LysR transcriptional regulatory family. (308 aa)    
Predicted Functional Partners:
yfeH
Putative Na+-dependent transporter; Similar to E. coli putative cytochrome oxidase (AAC75463.1); Blastp hit to AAC75463.1 (332 aa), 90% identity in aa 1 - 332.
  
  
 0.979
yhaJ
Similar to E. coli putative transcriptional regulator LYSR-type (AAC76140.1); Blastp hit to AAC76140.1 (298 aa), 96% identity in aa 1 - 298; Belongs to the LysR transcriptional regulatory family.
  
   
 0.878
ydhB
Similar to E. coli putative transcriptional regulator LYSR-type (AAC74731.1); Blastp hit to AAC74731.1 (310 aa), 90% identity in aa 1 - 310; Belongs to the LysR transcriptional regulatory family.
  
  
 0.867
yeeY
Similar to E. coli putative transcriptional regulator LYSR-type (AAC75076.1); Blastp hit to AAC75076.1 (316 aa), 87% identity in aa 8 - 309; Belongs to the LysR transcriptional regulatory family.
  
  
 0.839
yijO
Similar to E. coli putative ARAC-type regulatory protein (AAC76936.1); Blastp hit to AAC76936.1 (283 aa), 89% identity in aa 1 - 282.
  
  
 0.761
yidZ
Putative LysR family transcriptional regulator; Involved in anaerobic NO protection.
   
  
 0.728
ybeF
Similar to E. coli putative transcriptional regulator LYSR-type (AAC73730.1); Blastp hit to AAC73730.1 (266 aa), 68% identity in aa 1 - 266; Belongs to the LysR transcriptional regulatory family.
      
 0.717
STM0764
Similar to E. coli putative transcriptional regulator LYSR-type (AAC77283.1); Blastp hit to AAC77283.1 (303 aa), 30% identity in aa 9 - 300; Belongs to the LysR transcriptional regulatory family.
  
    0.714
ybdO
Similar to E. coli putative transcriptional regulator LYSR-type (AAC73704.1); Blastp hit to AAC73704.1 (300 aa), 54% identity in aa 1 - 298; Belongs to the LysR transcriptional regulatory family.
  
   
 0.691
uxuR
Similar to E. coli regulator for uxu operon (AAC77280.1); Blastp hit to AAC77280.1 (257 aa), 89% identity in aa 1 - 257.
   
  
 0.678
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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