yfgJ protein (Salmonella enterica Typhimurium)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

yfgJ

Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC75563.1); Blastp hit to AAC75563.1 (83 aa), 63% identity in aa 13 - 83. (73 aa)

Predicted Functional Partners:

engA

0.973

tolA

0.952

yfgM

0.915

yfgL

0.914

hisS

0.416

Your Current Organism:

Salmonella enterica Typhimurium

NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
engA	hisS	STM2519	STM2522	Putative GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis.	histidyl-tRNA synthetase. (SW:SYH_SALTY).	0.735
engA	yfgJ	STM2519	STM2518	Putative GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis.	Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC75563.1); Blastp hit to AAC75563.1 (83 aa), 63% identity in aa 13 - 83.	0.973
engA	yfgL	STM2519	STM2520	Putative GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis.	Putative serine/threonine protein kinase; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	0.880
engA	yfgM	STM2519	STM2521	Putative GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis.	Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC75566.1); Blastp hit to AAC75566.1 (206 aa), 88% identity in aa 1 - 206.	0.795
hisS	engA	STM2522	STM2519	histidyl-tRNA synthetase. (SW:SYH_SALTY).	Putative GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis.	0.735
hisS	yfgJ	STM2522	STM2518	histidyl-tRNA synthetase. (SW:SYH_SALTY).	Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC75563.1); Blastp hit to AAC75563.1 (83 aa), 63% identity in aa 13 - 83.	0.416
hisS	yfgL	STM2522	STM2520	histidyl-tRNA synthetase. (SW:SYH_SALTY).	Putative serine/threonine protein kinase; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	0.907
hisS	yfgM	STM2522	STM2521	histidyl-tRNA synthetase. (SW:SYH_SALTY).	Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC75566.1); Blastp hit to AAC75566.1 (206 aa), 88% identity in aa 1 - 206.	0.993
tolA	yfgJ	STM0747	STM2518	Similar to E. coli membrane spanning protein, required for outer membrane integrity (AAC73833.1); Blastp hit to AAC73833.1 (421 aa), 70% identity in aa 1 - 420.	Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC75563.1); Blastp hit to AAC75563.1 (83 aa), 63% identity in aa 13 - 83.	0.952
yfgJ	engA	STM2518	STM2519	Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC75563.1); Blastp hit to AAC75563.1 (83 aa), 63% identity in aa 13 - 83.	Putative GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis.	0.973
yfgJ	hisS	STM2518	STM2522	Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC75563.1); Blastp hit to AAC75563.1 (83 aa), 63% identity in aa 13 - 83.	histidyl-tRNA synthetase. (SW:SYH_SALTY).	0.416
yfgJ	tolA	STM2518	STM0747	Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC75563.1); Blastp hit to AAC75563.1 (83 aa), 63% identity in aa 13 - 83.	Similar to E. coli membrane spanning protein, required for outer membrane integrity (AAC73833.1); Blastp hit to AAC73833.1 (421 aa), 70% identity in aa 1 - 420.	0.952
yfgJ	yfgL	STM2518	STM2520	Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC75563.1); Blastp hit to AAC75563.1 (83 aa), 63% identity in aa 13 - 83.	Putative serine/threonine protein kinase; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	0.914
yfgJ	yfgM	STM2518	STM2521	Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC75563.1); Blastp hit to AAC75563.1 (83 aa), 63% identity in aa 13 - 83.	Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC75566.1); Blastp hit to AAC75566.1 (206 aa), 88% identity in aa 1 - 206.	0.915
yfgL	engA	STM2520	STM2519	Putative serine/threonine protein kinase; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	Putative GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis.	0.880
yfgL	hisS	STM2520	STM2522	Putative serine/threonine protein kinase; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	histidyl-tRNA synthetase. (SW:SYH_SALTY).	0.907
yfgL	yfgJ	STM2520	STM2518	Putative serine/threonine protein kinase; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC75563.1); Blastp hit to AAC75563.1 (83 aa), 63% identity in aa 13 - 83.	0.914
yfgL	yfgM	STM2520	STM2521	Putative serine/threonine protein kinase; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC75566.1); Blastp hit to AAC75566.1 (206 aa), 88% identity in aa 1 - 206.	0.991
yfgM	engA	STM2521	STM2519	Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC75566.1); Blastp hit to AAC75566.1 (206 aa), 88% identity in aa 1 - 206.	Putative GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis.	0.795
yfgM	hisS	STM2521	STM2522	Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC75566.1); Blastp hit to AAC75566.1 (206 aa), 88% identity in aa 1 - 206.	histidyl-tRNA synthetase. (SW:SYH_SALTY).	0.993

page 1 of 2

Server load: low (38%) [HD]

Permalink

Network

Neighborhood

Textmining

Fusion

Experiments

Co-occurrence

Databases

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About