Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
STM2551Putative inner membrane protein; Efflux system for nickel and cobalt. (328 aa)    
Predicted Functional Partners:
STM2552
Putative periplasmic or exported protein.
 
  
 0.962
STM4448
Putative phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type).
 
  
 0.596
cigR
Putative inner membrane protein; Pathogenicity island encoded protein: SPI3; CigR (gi|4324614).
  
   
 0.581
csiE
Stationary phase inducible protein; Similar to E. coli orf, hypothetical protein (AAC75588.1); Blastp hit to AAC75588.1 (433 aa), 71% identity in aa 8 - 432.
  
  
 0.578
STM0556
Putative transposase.
  
     0.481
STM0916
Putative Fels-1 prophage major tail protein.
  
     0.465
srfC
ssrAB activated gene; Predicted coiled-coil structure; SrfC (gi|8347260).
  
     0.441
yaiU
Flagellar protein; Similar to 3rd module of ATP-binding components of transporters; similar to E. coli putative flagellin structural protein (AAC73477.1); Blastp hit to AAC73477.1 (467 aa), 91% identity in aa 1 - 467.
  
    0.437
ecnR
Putative luxR family bacterial regulatory protein.
  
     0.424
srfA
ssrAB activated gene; SrfA (gi|8347258).
  
     0.413
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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