Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
STM2589Gifsy-1 prophage protein; Similar to host specificity protein-J in phage lambda. (1120 aa)    
Predicted Functional Partners:
STM2594
Gifsy-1 prophage protein; Similar to phage tail component H; lambda phage H tail component homolog (gi|2232364).
 
   0.983
STM2732
Fels-2 prophage protein; Similar to protein in phage 186.
   
  
 0.954
STM4198
Putative cytoplasmic protein.
   
  
 0.954
STM2590
Gifsy-1 prophage protein; Similar to tail assembly protein I in phage lambda.
  
   0.915
STM2230
Putative peptidase; Similar to E. coli SOS mutagenesis; error-prone repair; processed to UmuD'; forms complex with UmuC (AAC74267.1); Blastp hit to AAC74267.1 (139 aa), 38% identity in aa 22 - 139; Belongs to the peptidase S24 family.
   
  
 0.897
STM2592
Gifsy-1 prophage protein; Similar to phage tail component L.
  
   0.897
STM2603
Gifsy-1 prophage protein; Similar to head protein gp7 of phage 21.
  
    0.873
STM2591
Gifsy-1 prophage protein; Similar to tail assembly protein K in phage lambda.
  
    0.869
STM1041
Gifsy-2 prophage probable minor tail protein; Lambda phage H tail component homolog (gi|2232364).
 
   0.852
STM2597
Gifsy-1 prophage protein; Similar to major tail protein.
  
 
 0.847
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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