Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
STM2593Gifsy-1 prophage protein; Similar to phage tail component M; lambda phage M tail component homolog (gi|2232363). (109 aa)    
Predicted Functional Partners:
STM2592
Gifsy-1 prophage protein; Similar to phage tail component L.
 
   0.956
STM2596
Gifsy-1 prophage protein; Similar to minor tail protein.
  
    0.915
STM2594
Gifsy-1 prophage protein; Similar to phage tail component H; lambda phage H tail component homolog (gi|2232364).
  
   0.841
STM2595
Gifsy-1 prophage protein; Similar to minor tail protein.
  
    0.839
STM2597
Gifsy-1 prophage protein; Similar to major tail protein.
  
   0.837
STM2590
Gifsy-1 prophage protein; Similar to tail assembly protein I in phage lambda.
 
   0.803
STM2589
Gifsy-1 prophage protein; Similar to host specificity protein-J in phage lambda.
  
   0.769
STM2598
Gifsy-1 prophage protein.
  
    0.753
STM1046
Gifsy-2 prophage probable tail assembly protein.
  
  
 0.744
STM2608
Gifsy-1 prophage protein; Similar to terminase large chain gp2 of N15; similar to E. coli orf, hypothetical protein (AAC73662.1); Blastp hit to AAC73662.1 (247 aa), 53% identity in aa 7 - 132.
  
    0.715
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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