Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
STM2610Gifsy-1 prophage protein; Similar to E. coli orf, hypothetical protein (AAC74262.1); Blastp hit to AAC74262.1 (133 aa), 80% identity in aa 1 - 133. (133 aa)    
Predicted Functional Partners:
STM2604
Gifsy-1 prophage protein; Similar to head protein gpshp of phage 21.
  
    0.655
STM2608
Gifsy-1 prophage protein; Similar to terminase large chain gp2 of N15; similar to E. coli orf, hypothetical protein (AAC73662.1); Blastp hit to AAC73662.1 (247 aa), 53% identity in aa 7 - 132.
  
    0.616
STM1263
Putative periplasmic protein; Similar to E. coli orf, hypothetical protein (AAC75039.1); Blastp hit to AAC75039.1 (216 aa), 71% identity in aa 3 - 216.
   
  
 0.586
STM2609
Gifsy-1 prophage protein; Similar to DNA packaging protein Nu1 of phage 21; similar to E. coli homolog of Qin prophage packaging protein NU1 (AAC74621.1); Blastp hit to AAC74621.1 (189 aa), 58% identity in aa 1 - 162.
  
    0.584
STM2606
Gifsy-1 prophage protein; Similar to head-tail preconnector gp4 of phage 21.
  
    0.555
STM2605
Gifsy-1 prophage protein; Similar to head-tail preconnector gp5 of phage 21; similar to E. coli putative protease (AAC74354.1); Blastp hit to AAC74354.1 (349 aa), 27% identity in aa 124 - 300.
  
    0.549
STM2603
Gifsy-1 prophage protein; Similar to head protein gp7 of phage 21.
  
    0.534
STM2601
Gifsy-1 prophage protein; Similar to minor capsid protein FII of phage N15.
  
    0.496
STM2602
Gifsy-1 prophage protein; Similar to DNA packaging protein gp9 of phage N14.
  
    0.491
STM2598
Gifsy-1 prophage protein.
   
    0.487
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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