Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
STM2614Gifsy-1 prophage protein. (228 aa)    
Predicted Functional Partners:
STM1026
Gifsy-2 prophage protein.
   
 
0.993
STM2616
Gifsy-1 prophage; Similar to antirepressor protein of phage P22.
   
  
 0.954
pipA
Pathogenicity island encoded protein: SPI5.
     
 
0.900
STM2611
Gifsy-1 prophage protein; Similar to E. coli bacteriophage lambda endopeptidase homolog (AAC73657.1); Blastp hit to AAC73657.1 (153 aa), 46% identity in aa 8 - 153.
  
    0.495
STM2612
Gifsy-1 prophage protein; Similar to morphogenesis protein of phage B103; similar to E. coli bacteriophage lambda lysozyme homolog (AAC73656.1); Blastp hit to AAC73656.1 (165 aa), 39% identity in aa 35 - 161.
  
    0.458
STM2613
Gifsy-1 prophage protein.
       0.442
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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