STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
STM2626Gifsy-1 prophage protein; Similar to replication protein 15; probable replication protein (gi|7467283). (327 aa)    
Predicted Functional Partners:
STM2625
Gifsy-1 prophage protein; Similar to dnaC homolog in S. typhimurium; dnaC protein homolog (gi|7443681).
 
  
 0.844
STM2624
Gifsy-1 prophage protein; Hypothetical protein (gi|7467246).
       0.783
STM2623
Gifsy-1 prophage protein; Hypothetical protein 11 (gi|7467260).
       0.773
STM4261
Putative inner membrane protein; Fusion of two hypothetical proteins; (gi|7467255) and (gi|7467255).
  
     0.661
STM0898
Predicted Fels-1 prophage transcriptional regulator.
 
     0.637
wcaK
Putative galactokinase; In colanic acid gene cluster; similar to E. coli putative galactokinase. (AAC75106.1); Blastp hit to AAC75106.1 (426 aa), 67% identity in aa 1 - 426.
  
     0.576
STM2622
Gifsy-1 prophage protein; Hypothetical protein 11 (gi|7467261).
       0.566
STM2627
Gifsy-1 prophage protein; Similar to cI protein in phage N; probable regulatory protein (gi|7467282).
       0.559
STM3098
Putative transcriptional regulator.
  
     0.539
fliB
N-methylation of lysine residues in flagellin; Post-translationally modifies flagellin by methylation of epsilon amino group of surface-exposed lysine residues.
  
     0.510
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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