STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
STM2630Gifsy-1 prophage protein; Hypothetical protein 4 (gi|7467265). (52 aa)    
Predicted Functional Partners:
STM2620
Gifsy-1 prophage protein.
   
  
 0.954
STM2702
Fels-2 prophage protein; Similar to te-specific recombinases; DNA invertase Pin homolog; similar to E. coli inversion of adjacent DNA; at locus of e14 element (AAC74242.1); Blastp hit to AAC74242.1 (184 aa), 88% identity in aa 3 - 180.
   
  
 0.954
STM2703
Fels-2 prophage protein; Similar to invertase (pin) in phage E14; unknown (gi|2852344).
   
  
 0.857
STM2706
Fels-2 prophage protein; Similar to tail fiber protein in phage P2.
   
  
 0.853
STM2629
Gifsy-1 prophage protein; Hypothetical protein 2 (gi|7467263).
       0.773
STM2631
Gifsy-1 prophage protein; Hypothetical protein 4 (gi|7467264).
  
    0.713
STM2628
Gifsy-1 prophage protein; Probable regulatory protein (gi|7467281).
       0.631
STM2634
Putative cytoplasmic protein.
  
    0.475
STM2633
Gifsy-1 prophage protein; Similar to enterohemolysin 1 in E. coli; hypothetical protein AAC26069.1 (gi|7467267).
       0.471
STM2632
Gifsy-1 prophage protein; Exodeoxyribonuclease VIII homolog (gi|7467238).
       0.468
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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