STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yfiKPutative transport protein; Exporter of O-acetylserine (OAS) and cysteine; Belongs to the Rht family. (195 aa)    
Predicted Functional Partners:
ydeD
Putative permease, integral membrane protein; May be an export pump for several amino acids and their metabolites, including cysteine; Belongs to the EamA transporter family.
   
  
 0.896
rthB
Homoserine/homoserine lactone efflux protein; Conducts the efflux of homoserine and homoserine lactone. Belongs to the Rht family.
  
   
 0.764
yhgE
Putative inner membrane protein; Similar to E. coli putative transport (AAC76427.1); Blastp hit to AAC76427.1 (574 aa), 56% identity in aa 1 - 574.
  
  
 0.709
yhaO
Similar to E. coli putative transport system permease protein (AAC76145.1); Blastp hit to AAC76145.1 (425 aa), 97% identity in aa 3 - 425.
   
  
 0.678
yfiE
Similar to E. coli putative transcriptional regulator LYSR-type (AAC75630.1); Blastp hit to AAC75630.1 (308 aa), 78% identity in aa 16 - 305; Belongs to the LysR transcriptional regulatory family.
 
    0.626
ygeD
Putative efflux protein; Catalyzes the facilitated diffusion of 2-acyl-glycero-3- phosphoethanolamine (2-acyl-GPE) into the cell; Belongs to the major facilitator superfamily. LplT (TC 2.A.1.42) family.
   
  
 0.587
ydcN
Putative oxidoreductase; Similar to E. coli orf, hypothetical protein (AAC74516.1); Blastp hit to AAC74516.1 (178 aa), 72% identity in aa 1 - 177; putative repressor.
  
     0.479
bcr
Bicyclomycin resistance protein; MFS family multidrug transport protein; similar to E. coli bicyclomycin resistance protein; transmembrane protein (AAC75243.1); Blastp hit to AAC75243.1 (396 aa), 93% identity in aa 1 - 396.
      
 0.476
yhgN
Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC76459.1); Blastp hit to AAC76459.1 (197 aa), 72% identity in aa 4 - 39.
      
 0.453
STM4014
Putative periplasmic protein.
  
     0.446
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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