| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| rsxA | rsxC | STM1459 | STM1457 | Putative inner membrane oxidoreductase protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR. | Putative respiratory-chain NADH dehydrogenase; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR; Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily. | 0.994 |
| rsxA | ydgM | STM1459 | STM1458 | Putative inner membrane oxidoreductase protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR. | Putative alternative beta subunit of Na+-transporting NADH:ubiquinone oxidoreductase; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR; Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | 0.999 |
| rsxA | ydgO | STM1459 | STM1456 | Putative inner membrane oxidoreductase protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR. | Putative oxidoreductase; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR; Belongs to the NqrB/RnfD family. | 0.990 |
| rsxA | ydgP | STM1459 | STM1455 | Putative inner membrane oxidoreductase protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR. | Putative Na+-transporting NADH:ubiquinone oxidoreductase gamma subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR; Belongs to the RnfG family. | 0.988 |
| rsxA | ydgQ | STM1459 | STM1454 | Putative inner membrane oxidoreductase protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR. | Putative membrane NADH-quinone reductase protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR. | 0.977 |
| rsxA | yfjF | STM1459 | STM2686 | Putative inner membrane oxidoreductase protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR. | Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC75667.1); Blastp hit to AAC75667.1 (102 aa), 87% identity in aa 7 - 102; Belongs to the UPF0125 (RnfH) family. | 0.677 |
| rsxC | rsxA | STM1457 | STM1459 | Putative respiratory-chain NADH dehydrogenase; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR; Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily. | Putative inner membrane oxidoreductase protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR. | 0.994 |
| rsxC | ydgM | STM1457 | STM1458 | Putative respiratory-chain NADH dehydrogenase; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR; Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily. | Putative alternative beta subunit of Na+-transporting NADH:ubiquinone oxidoreductase; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR; Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | 0.996 |
| rsxC | ydgO | STM1457 | STM1456 | Putative respiratory-chain NADH dehydrogenase; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR; Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily. | Putative oxidoreductase; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR; Belongs to the NqrB/RnfD family. | 0.999 |
| rsxC | ydgP | STM1457 | STM1455 | Putative respiratory-chain NADH dehydrogenase; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR; Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily. | Putative Na+-transporting NADH:ubiquinone oxidoreductase gamma subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR; Belongs to the RnfG family. | 0.998 |
| rsxC | ydgQ | STM1457 | STM1454 | Putative respiratory-chain NADH dehydrogenase; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR; Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily. | Putative membrane NADH-quinone reductase protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR. | 0.998 |
| rsxC | yfjF | STM1457 | STM2686 | Putative respiratory-chain NADH dehydrogenase; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR; Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily. | Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC75667.1); Blastp hit to AAC75667.1 (102 aa), 87% identity in aa 7 - 102; Belongs to the UPF0125 (RnfH) family. | 0.707 |
| smpB | yfjF | STM2688 | STM2686 | Small protein B; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to tran [...] | Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC75667.1); Blastp hit to AAC75667.1 (102 aa), 87% identity in aa 7 - 102; Belongs to the UPF0125 (RnfH) family. | 0.585 |
| smpB | yfjG | STM2688 | STM2687 | Small protein B; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to tran [...] | Putative oligoketide cyclase/lipid transport protein; Similar to E. coli orf, hypothetical protein (AAC75668.1); Blastp hit to AAC75668.1 (158 aa), 88% identity in aa 1 - 157. | 0.589 |
| ydgM | rsxA | STM1458 | STM1459 | Putative alternative beta subunit of Na+-transporting NADH:ubiquinone oxidoreductase; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR; Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | Putative inner membrane oxidoreductase protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR. | 0.999 |
| ydgM | rsxC | STM1458 | STM1457 | Putative alternative beta subunit of Na+-transporting NADH:ubiquinone oxidoreductase; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR; Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | Putative respiratory-chain NADH dehydrogenase; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR; Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily. | 0.996 |
| ydgM | ydgO | STM1458 | STM1456 | Putative alternative beta subunit of Na+-transporting NADH:ubiquinone oxidoreductase; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR; Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | Putative oxidoreductase; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR; Belongs to the NqrB/RnfD family. | 0.989 |
| ydgM | ydgP | STM1458 | STM1455 | Putative alternative beta subunit of Na+-transporting NADH:ubiquinone oxidoreductase; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR; Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | Putative Na+-transporting NADH:ubiquinone oxidoreductase gamma subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR; Belongs to the RnfG family. | 0.991 |
| ydgM | ydgQ | STM1458 | STM1454 | Putative alternative beta subunit of Na+-transporting NADH:ubiquinone oxidoreductase; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR; Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | Putative membrane NADH-quinone reductase protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR. | 0.988 |
| ydgM | yfjF | STM1458 | STM2686 | Putative alternative beta subunit of Na+-transporting NADH:ubiquinone oxidoreductase; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR; Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC75667.1); Blastp hit to AAC75667.1 (102 aa), 87% identity in aa 7 - 102; Belongs to the UPF0125 (RnfH) family. | 0.837 |
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