Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
STM2901Putative cytoplasmic protein. (149 aa)    
Predicted Functional Partners:
STM2902
Putative cytoplasmic protein.
  
  
 0.989
STM2903
Putative cytoplasmic protein.
      
 0.954
STM2908
Putative cytoplasmic protein.
      
 0.897
orfX
Pathogenicity island encoded protein: SPI5.
      
 0.857
STM1093
Pathogenicity island encoded protein: SPI5.
      
 0.766
pphB
Serine/threonine specific protein phosphatase 2; Can hydrolyze phosphorylated Ser-, Thr- or Tyr-substrates in vitro. The natural substrate is unknown.
      
 0.727
STM1089
Pathogenicity island encoded protein: SPI5.
      
 0.700
rhuM
Putative cytoplasmic protein; Pathogenicity island encoded protein: SPI3; RhuM (gi|4324608).
      
 0.579
sitD
Fur regulated Salmonella iron transporter; SitD (gi|5231097).
      
 0.515
avrA
Putative inner membrane protein.
   
  
 0.514
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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